Publications
Peer-reviewed articles, preprints, and book chapters
- DeNoFo: a file format and toolkit for standardised, comparable de novo gene
annotation
Dohmen E, Aubel M, Eicholt LA, Roginski P, Luria V, Karger A, Grandchamp A
preprint on bioRxiv, 2025 đź“„ - De Novo Gene Emergence: Summary, Classification, and Challenges of Current Methods
Grandchamp A, Aubel M, Eicholt LA, Roginski P, Luria V, Karger A, Dohmen E
preprint on EcoEvoRxiv, 2025 đź“„ - Reduced regulatory complexity associated with the evolutionary transition to sociality from
cockroaches to termites despite evolutionary parallels with Hymenoptera
Jones ARC, Dohmen E, Berger J, Legendre F, Harrison MC, Bornberg-Bauer E
preprint on bioRxiv, 2024 đź“„ - Major changes in domain arrangements are associated with the evolution of termites
Mikhailova A, Dohmen E, Harrison MC
Journal of Evolutionary Biology, 2024 đź“„ - Comparative Evolutionary Genomics in Insects
Feldmeyer B, Bornberg-Bauer E, Dohmen E, Fouks B, Heckenhauer J, Huylmans AK, Jones ARC, Stolle E, Harrison MC
Comparative Genomics. Methods in Molecular Biology, 2024 đź“„ - Complex regulatory role of DNA methylation in caste- and age-specific expression of a
termite
Harrison MC, Dohmen E, George S, Sillam-Dussès D, Séité S, Vasseur-Cognet M
Open Biology, 2022 đź“„ - New Genomic Signals Underlying the Emergence of Human Proto-Genes
Grandchamp A, Berk K, Dohmen E, Bornberg-Bauer E
Genes, 2022 đź“„ - The modular nature of protein evolution: Domain rearrangement rates across eukaryotic
life
Dohmen E, Klasberg S, Bornberg-Bauer E, Perrey S, Kemena C
BMC Evolutionary Biology, 2020 đź“„ - Gene content evolution in the arthropods
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic N-M, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S
Genome Biology, 2020 đź“„ - Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme
Yang G, Anderson DW, Baier F, Dohmen E, Hong N, Carr PD, Kamerlin SCL, Jackson C, Bornberg-Bauer E, Tokuriki N
Nature Chemical Biology, 2019 đź“„ - DOGMA: a web server for proteome and transcriptome quality assessment
Kemena C, Dohmen E, Bornberg-Bauer E
Nucleic Acids Research, 2019 đź“„ - Reactive oxygen species (ROS) and the heat stress response of Daphnia pulex: ROS-mediated
activation of hypoxia-inducible factor 1 (HIF-1) and heat shock factor 1 (HSF-1) and the
clustered expression of stress genes
Klumpen E, Hoffschröer N, Zeis B, Gigengack U, Dohmen E, Paul RJ
Biol. Cell, 2017 đź“„ - DOGMA: domain-based transcriptome and proteome quality assessment
Dohmen E, Kremer LPM, Bornberg-Bauer E, Kemena C
Bioinformatics, 2016 đź“„ - Protein Domains as Molecular Markers for Large Scale Sequence Analysis
Elias Dohmen
PhD Thesis , 2020 đź“„ - Detect de novo expressed ORFs in transcriptomes with DESwoMAN
Grandchamp A, Lebherz MK, Dohmen E
preprint on bioRxiv, 2025 đź“„